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The HPC cluster systems use the Sun Grid Engine (SGE) queue scheduler system. The feature of a queue scheduler system that users interact with the most is that of job submission. The manual pages for SGE are very good and should be referred to for details. For this particular topic the qsub manual page is the authoritative source.

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man qsub

This document provides a brief introduction to the most common options that might be used to submit jobs to the SGE system. It will focus on single processor jobs as that is the most basic case, but not necessarily the most common. Details on submission of parallel jobs is covered inĀ Advanced Job Submission.

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The default queue is set to be the UI queue, which has a 25 running jobs per user limit on Helium and a 10 running jobs per user limit on Neon. In addition, Neon has a high memory queue (UI-HM) with a 4 running jobs per user limit. If you have many single processor jobs to run it would be better to submit them to the all.q queue, which has no limit, but is subordinate /wiki/spaces/hpcdocs/pages/76513448 to the other queues.

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qsub -q all.q myscript.job

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