Versions Compared

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

The HPC cluster systems use the Sun Grid Engine (SGE) queue scheduler system. The feature of a queue scheduler system that users interact with the most is that of job submission. The manual pages for SGE are very good and should be referred to for details. For this particular topic the qsub manual page is the authoritative source.

No Format
man qsub

This document provides a brief introduction to the most common options that might be used to submit jobs to the SGE system. It will focus on single processor jobs as that is the most basic case, but not necessarily the most common. Details on submission of parallel jobs is covered in Advanced Job Submission.

...

Note

Shell redirection, ie.

command > stdout.file

will override the 'qsub -o' setting.

...

Anchor
arrayjobs
arrayjobs
Array Jobs

An array job is a group of identical tasks that are differentiated only by an index number. 

...